PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.006G170100.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 231aa    MW: 23935.5 Da    PI: 5.0884
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.006G170100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.1e-184392255
                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           y+GVr ++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  Sobic.006G170100.1.p 43 TYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFATAEMAARAHDVAALAIKG 92
                          69****998.**********843...6***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.7E-3643107IPR001471AP2/ERF domain
PfamPF008471.6E-124392IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-1943102IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.2E-3143102IPR001471AP2/ERF domain
PROSITE profilePS5103222.64243101IPR001471AP2/ERF domain
PRINTSPR003671.0E-104455IPR001471AP2/ERF domain
CDDcd000184.75E-2744101No hitNo description
PRINTSPR003671.0E-106682IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MDDAQEPASP TSPSPSSSSS SSSSSSSVGP KKRARKDGSR HPTYRGVRMR SWGKWVSEIR  60
EPRKKSRIWL GTFATAEMAA RAHDVAALAI KGARDAHLNF PSQAHLLPRP ASAAPKDVQA  120
AAALAAAADF PPLPSSCPCP GEGAGNAKSP ESSSSDDASA SAASPPPPPP PPPPAPQEDA  180
EPNPDDALFD LPDLLLDLRC CGPSSWAVAD DDVAGGGAFR LIEEPLLWEY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-1444105667ATERF1
3gcc_A3e-1444105667ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.75565e-85leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9653060.0EU965306.1 Zea mays clone 285154 dehydration-responsive element-binding protein 1C mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976435.16e-76PREDICTED: ethylene-responsive transcription factor ERF039-like
SwissprotQ8LBQ72e-45ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLB6TJZ12e-81B6TJZ1_MAIZE; Dehydration-responsive element-binding protein 1C
STRINGGRMZM2G172936_P015e-81(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.13e-36ERF family protein